sfaira.ui.UserInterface.load_data¶
- UserInterface.load_data(data: anndata._core.anndata.AnnData, gene_symbol_col: Optional[str] = None, gene_ens_col: Optional[str] = None, obs_key_celltypes: Optional[str] = None)¶
Loads the provided AnnData object into sfaira.
- If genes in the provided AnnData object are annotated as gene symbols,
please provide the name of the corresponding var column (or ‘index’) through the gene_symbol_col argument.
- If genes in the provided AnnData object are annotated as ensembl ids,
please provide the name of the corresponding var column (or ‘index’) through the gene_ens_col argument.
You need to provide at least one of the two. :param data: AnnData object to load :param gene_symbol_col: Var column name (or ‘index’) which contains gene symbols :param gene_ens_col: ar column name (or ‘index’) which contains ensembl ids :param obs_key_celltypes: .obs column name which contains cell type labels.