sfaira.versions.metadata.CelltypeUniverse¶

class sfaira.versions.metadata.CelltypeUniverse(cl: Union[sfaira.versions.metadata.base.OntologyCl, sfaira.versions.metadata.base.OntologyList], uberon: sfaira.versions.metadata.base.OntologyUberon, **kwargs)¶

Cell type universe (list) and ontology (hierarchy) container class.

Basic checks on the organ specific instance are performed in the constructor.

Attributes

`onto_cl`
`onto_uberon`

Methods

load_target_universe(fn)

param fn: .csv file containing target universe.

write_target_universe(fn, x)

param fn: .csv file containing target universe.